Metadata-Version: 1.1
Name: presto
Version: 0.5.13
Summary: A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
Home-page: http://presto.readthedocs.io
Author: Jason Anthony Vander Heiden
Author-email: immcantation@googlegroups.com
License: Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
Download-URL: https://bitbucket.org/kleinstein/presto/downloads
Description: pRESTO - The REpertoire Sequencing TOolkit
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        pRESTO is a toolkit for processing raw reads from high-throughput sequencing of
        B cell and T cell repertoires.
        
        Dramatic improvements in high-throughput sequencing technologies now enable
        large-scale characterization of lymphocyte repertoires, defined as the
        collection of trans-membrane antigen-receptor proteins located on the surface of
        B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a
        suite of utilities to handle all stages of sequence processing prior to germline
        segment assignment. pRESTO is designed to handle either single reads or
        paired-end reads. It includes features for quality control, primer masking,
        annotation of reads with sequence embedded barcodes, generation of
        unique molecular identifier (UMI) consensus sequences, assembly of paired-end 
        reads and identification of duplicate sequences. Numerous options for sequence 
        sorting, sampling and conversion operations are also included.
        
Keywords: bioinformatics,sequencing,immunology,adaptive immunity,immunoglobulin,AIRR-seq,Rep-Seq,B cell repertoire analysis,adaptive immune receptor repertoires
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.4
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
